Solved How to Remove .scr Virus Without Losing Infected Folders?

Hi, everyone.
My question is not HOW to remove the .scr virus from my flash drive, I think I already have that covered with the help of this article here:
http://www.techbae.com/remove-scr-v…

I suppose you all agree with it..(???)

My real question is the following: If I get rid of the virus using the method above will my folders be LOST?
Those are really important folders so, I would appreciate it if you could verify that this method of removal really doesn’t make my folders vanish and, if it does, please, could you suggest another way for me to remove the virus without me losing the files?

Thank you very much in advance.