the problem isn't ghost here, it's your bootable floppy with PC-DOS (or a bootable win98 cd) ... most likely it fails to detect the hard drive on modern controllers, however, the there's a remedy for that.
get BartPE or the Vista PE builder and create a windows live CD. with BartPE you can include symantec ghost as a plugin ... but all you really need is one particular file on that CD: ghost32.exe (version 8.3 at least or better 11.0)
now this baby will clone ANYTHING for you, regardless the file system (FAT16, FAT32, NTFS, HPFS, Ext2, Ext3, ReiserFS)
again, don't confuse Norton Ghost 9, 10 or 12 (current version :) with Symantec Ghost! these versions are evolved from PowerQuest's Drive Image, using an entirely different technology and are USELESS!
edit: here's a screen shot of BartPE in a VBox running ghost 11.0
http://img69.imageshack.us/img69/91...