I have been overtaken by popup ads, mostly winantivirus. I have run spy bot but no luck in eliminating them.

Try this removal tool.
VundoFix by Atribune

I just finished running it. It found no infected files

Try this one ( it's different )
http://www.atribune.org/content/vie...

I'm not for sure if the program worked, It said do I want to remove sysprotection now and it took about 1 second.

Well, are you still getting popups?.

yes...I just got one from czedo.net

Did you reboot after using sysprotect.

Here is all the info needed to get your comp clean, no need to buy anything, stick to the free programs, just a matter of finding sites that suit your skill level & using a search engine like Google to research each problem file found.
Securing Your Computer: Temporarily Disable Real Time Monitoring Programs.
http://wiki.castlecops.com/Securing...
If Your PC is Infested w/ Spyware & Adware...
http://spywarewarrior.com/sww-help.htm
Trustworthy Anti-Spyware Products ( near the bottom of the page )
http://www.spywarewarrior.com/rogue...
http://pandaman.my.contact.bg/Gen_M...
Note !!! Now, if you wasn’t able to clean your computer, perform the following, Special Clean instructions.
http://pandaman.my.contact.bg/speci...
http://www.malwarehelp.org/how-to-c...
http://spywarewarrior.com/sww-help.htm
http://spywarewarrior.com/viewtopic...
http://spywarewarrior.com/viewtopic...
http://spywarewarrior.com/viewtopic...
http://spywarewarrior.com/viewforum...
http://www3.telus.net/dandemar/slow...
http://discussions.virtualdr.com/sh...
http://www.wilderssecurity.com/show...
http://forums.techguy.org/security/...
Important: Create a specific folder on your hard drive called HijackThis to keep its backups.
You can do this by going to My Computer (Windows key+e) then double click on C: then right click and select New then Folder and name it HijackThis. Download and unzip HijackThis.exe into this folder.
http://www.merijn.org/downloads.html Or, http://tomcoyote.com/hjt/
If possible run HJT in Normal mode ( not Safe ) with all your normal startup's working.
HijackThis Tutorial - How to Analyse your own log
http://spywarewarrior.com/viewtopic...
http://hometown.aol.co.uk/jrmc137/h...
http://www.bleepingcomputer.com/tut...
http://www.malwarehelp.org/understa...
HijackThis log file analysis ( online )
http://hijackthis.de/index.php?lang...
Or,
http://startup.networktechs.com/pag...
http://hjt.iamnotageek.com