I suppose you mean SYS$SYSROOT instead of SYS$ROOT. The latter is not standard VMS. SYS$SYSROOT is a searchlist of both SYS$COMMON and SYS$SPECIFIC. When you have a cluster with a shared system disk, every node has its own SYS$SPECIFIC, but share a SYS$COMMON. If the system searches for a file in SYS$SYSROOT, it first searches in SYS$SPECIFIC, and if it can't find it, in SYS$COMMON. When you edit a file in SYS$SYSROOT or subdirectory (e.g. SYS$MANAGER) , it will save it in SYS$SPECIFIC, even if the original file was in SYS$COMMON. So the two files may be a mistake. See http://h71000.www7.hp.com/doc/731FINAL/4477/4477pro_006.html#directory_map
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