Last night I removed the controller card, and my small (original HD) I hooked up my second HD as my master and installed a new copy of WinXP and made my new Big HD my Slave drive. (I only have 2 HD's now.) Then I installed all the new drivers and all existing patches (including WinXP SP2, and the new ATI Catalyst drivers) I was essentially working with a new comp, as in no garbage or junk scattered around the HD or registry.
I had even worse problems with Doom 3. it wouldn't even go the menu and sometimes made the screen all pixelated and dropped me to the desktop, where the pixelization was still present so I couldnt' read the error message and had to hard reboot.
Here's the crazy part, I rebooted, and went to sytem device manager and removed my video card. Then I did a reboot and when it came back up windows said it found new hardware and automatically installed the drivers for my Radeon 9700 Pro, (apparently whatever version of the drivers that were in Windows XP) and now it works flawlessly. I was even able to increase the screen size and bump the quality to good without noticeable dropoff in quality. i'm goin to try Joint Ops again tonight.
Apparently, I must have automatically updated my video drivers when I installed the HD or when I bought Doom 3(I ordered it and may have gone ahead and checke for any newer drivers for my video and sound cards, I must have been in "up date mode" And I know that usually keeping your drivers updated is a good idea. But not with the damn catalyst drivers. I say if a game works, and that is your main use of your comp at the time, LEAVE IT ALONE! I should have tried Doom 3 first, to see if it worked before changing anything on my computer.
DAMN THE ATI CATALYST DRIVERS!
But the new Omega drivers didn't help either, possibly because they were based on the new Catalyst drivers.